-
## Context
Our automated workflows use short lived AWS credentials for sessions which are limited by the [max_session_duration](https://github.com/nextstrain/infra/blob/814a7e4cd635b40c12fb0c4e83b168…
-
## Proposal for new sublineage f BA.2.86.1with additional mutations S:N30G and S:G594S
Countries detected: Denmark(10)
Earliest sequence: (dd-mm-yy) 19-09-23
Defining mutations: S:N30G and S…
-
- Revisar esquema Gisaid (Maria Lara)
- relecov-tools map para gisaid
- relecov-tools upload-to-gisaid usando multisub https://github.com/maximilianh/multiSub
-
- [x] check-submissions: Allow option to update a single submission instead of updating all submissions in log.
- [x] **other organism: Allow any organism to be used with the flag "other" .**
Other …
-
## Context
In a pathogen repo, there will technically be 3 separate workflows that can be run: ingest, phylogenetic, and nextclade.
It's unclear how we want to set up the standardized GitHub Actio…
-
-
Hi, @maximilianh
It's a useful tool for submitting viral sequences in bulk.
I am wondering to know if it was possible to provide submission of pathogenic sequences other than COVID-19 (e.g influe…
-
Write accessory scripts to upload clean reads as biosamples and final assembly to nexstrain/GISAID
-
Formerly known as FLIRT Branch 63 (spotted by @aviczhl2)
Defining:
JN.1.11.1 > Orf1b:A2143V (C19895T) > S:R346T (G22599C)
Query : C19895T,G22599C,T3565C
Samples: 5 On Gisaid from Australia , …
-
Hi there,
First, thanks for your work and the latest updates!
We stumbled across a few samples from the last months that pangolin assigns to a top-level lineage, namely BA.2 or XBB.1.
The nextc…