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As discussed in today's meeting with @stschiff and @AyGhal the variables `MT_Haplogroup` and `Y_Haplogroup` could be specified a bit further. I see two possible ToDos:
1. Come up with a minimal val…
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I am unable to find in the documentation how exactly a phylotree should be specified in the `--phylotree` argument of `haplogrep classify`.
For example, all the following fail:
```
--phylotree=…
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The table is result of my haplogrep2 Quality score and some quality score >1 ,Is this situation right?
Rank | Quality | Not_Found_Polys
-- | -- | --
1 | 0.8112 | 16217C
1 | 0.8674 | 827G 5093C 630…
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Hello, I'm using this program to assign haplogroups to some 1000 Genomes samples, but I am only getting the major haplogroups.
According to the paper: "YHap can be customized to either only assign…
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Hi, I've been trying to use MToolbox for a while. I have latest version and reinstaled everything at least two times.
I have tried with my own bam file, solving problem by problem until I reached a…
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**Käsitteen tyyppi**
CONCEPT
**Ehdotettu termi suomeksi**
haploryhmät
**Ehdotettu termi ruotsiksi**
haplogrupper
**Ehdotettu termi englanniksi**
haplogroups
**Tarkoitusta täsmentävä selite**
…
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Is it possible to make the Mito Haplo group section multiple boxes like the Match Count/Population Frequency section? When we receive information from AFDIL they don't always provide anything beyond t…
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The feature released in 497cf6c13e23a7802eee5c3a96d07b855bff3119 in response to #12 allows for the export of the best _n_ haplogroups.
When running with microarray data using the `--chip` flag, of…
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I think it would make more sense to change our current mito haplogroup field to two separate drop downs and an alphanumeric field because it does not accurately reflect the haplogroup data we get. We …
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Hi, all,
I have been using MToolBox for a while. It went smoothly when I used RSRS as ref. However, when I use RCRS as ref, it can not compute haplogroup. Please help.
Thanks