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Hi @tprodanov,
Thank you for creating this tool. I want to try it for the cattle genome. Could you show me the format of the BED file for the parascopy depth command? Is the bin size 100 bp? Thank yo…
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Hi, will support for non-human genomes be added? Thanks!
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Is it possible to work with a different genome species? Can I incorporate an alternative annotation file for plotting?
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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I really would like to use your visualization tool with bacterial genomes, but all of the examples I can find are with human data. Can you please provide some examples of exactly how to format your da…
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Hello,
I ran across SegAlign after talking with a collaborator who has had previous success using SegAlign to produce alignments in mammilian genomes for downstream comparative analyses. I am tryin…
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I think CNApp is a really helpfull tool. Any way it can support also non-human genomes?
Thank you!
Serena
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Hi Anni,
First many thanks for your contribution in AMR risk assessment. It's very useful.
Here I have two questions. The first one is about Rank-IV ARGs. From our metagenomics analysis we found tha…
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Hello,
I wonder if and how it would be possible to build a genome graph for a set of plant genomes.
I will have a few (4-8) de novo assemblies in fasta format, is that sufficient to generate a graph…
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These seem to be CVMFS
Identified so far
* `dm3`
* [testing history](https://usegalaxy.eu/u/jenj/h/galaxy-workflow-galaxy-hi-c-1) using the [hic workflow in this tutorial](https://training.gala…