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As per https://github.com/icgc-argo/workflow-roadmap/issues/377:
We'll need to generate a bed file documentating regions highlighted in https://info.foundationmedicine.com/hubfs/FMI%20Labels/Founda…
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Supporting documentation to help users of the ICGC 25K portal find relevant data references after the portal's shutdown later this month.
This will add a page to the ARGO doc's site that can be u…
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In the current data model, `specimen_acquisition_interval` indicates the interval between primary diagnosis and specimen acquisition in days. It is an integer larger than 0.
However, for program M…
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Supporting documentation to help users of the ICGC 25K portal find relevant data references after the portal's shutdown later this month.
We have completed a data audit that provides mappings bet…
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CCLE, PCAWG, and TCGA we can use the consortium-provided metadata and link it to samples.
For each sample it stores a reference to a metadata file - we already sort of have this, but the problem is…
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Clinical Errors / Schema Validation Errors should be updated to include an identifying value (for example `primary_diagnosis_id`) or other detailed information related to the specific record with the …
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## Describe the bug
Null pointer is thrown trying to log enqueue events.
https://github.com/icgc-argo/workflow-graph-node/blob/develop/src/main/java/org/icgc_argo/workflowgraphnode/logging/GraphLo…
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After the April IT Maintenance, the ICGC-ARGO DACO2EGO setup has been running extremely slow.
- icgc completes around 3 am
- icgc-argo completes around 9 am
![image](https://user-images.githubus…
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When submitting a new dictionary, only `x.xx` versions are allowed.,
We have run into issues with this in the ARGO implementation - three levels of version would help with dictionary version manag…