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### Ask away!
When I utilized EPI2ME lab to conduct wf-human-variation workflow for SNP calling that generated the VCF file, I cannot obtain information from the IGV viewer integrated with EPI2ME lab…
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Hi,
I am using IGV version 2.18.2 on linux. When plotting reads per BAM file, I noticed that the genome track exhibits color overlap, as shown in the attached picture.
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In particular, I ran Dorado wit…
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Hi, thanks for inventing such a useful tool aimed at variant calling. There are several questions I have during using this fantastic tool.
1. Is it possible to visualize the final result, which is in…
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**Is your feature request related to a problem? Please describe.**
I'd like to incorporate this module on IGV desktop and the upstream maintainers might not accept the PR unless the .jar is publicl…
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Rel: #1663 The original issue was closed due to inactivity but I believe this is a useful feature to include.
@jrobinso regarding your https://github.com/igvteam/igv.js/issues/1663#issuecomment-163…
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Hi .. I was wondering if there is a way of adding a bedfile entry with actionable link to navigate to another feature /genomic coordinate in the opened IGV session
something like:
#gffTags
chr1…
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**Is your feature request related to a problem in the current program to new available techology or software? Please describe and add links/citations if appropriate.**
Ribbon https://github.com/Mar…
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I want to use bamcoverage to produce some publication quality graphs with R. I got a bit puzzled how coverage is actually calculated, because it seems to be higher than what I see in IGV and also what…
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From igv-help group...
Hi,
We are trying to visualize bams generated by minimap2, run as part of the dipcall pipeline (https://github.com/lh3/dipcall), for the Genome in a Bottle HG002 Q100 T2T a…