-
Hello!
Tell us, please, what IMGT version is in the reference graph?
-
Hi,
The IMGT/HLA reference from version 3.56.0 onwards provides large files as zip files, as can be read on the [IMGT/HLA github page](https://github.com/ANHIG/IMGTHLA):
```As of Release 3.56.0, …
-
There's a download link (https://www.imgt.org/download/V-QUEST/) on the IMGT reference directory page (https://www.imgt.org/vquest/refseqh.html#VQUEST) that appears to download all sequences (instead …
-
The script `fetch-imgt` in `CellRanger` no longer works, because it include an `http` URL that now needs to be `https`.
Apparently, this will be fixed in the next release.
In the meantime, a wor…
-
I just pushed the files in result/Analyses named anomalies_sequences_...
It appears that there are problems only on the real data, where some sequences can't be found in the reference file. The scr…
-
Hello,
Does HLA-LA support to update IMGT db ? or to use specific IMGT version ?
Best
-
Hi,
I cannot seem to run the IMGT renumbering for some TCR pdb structures.
_(base) python Example_scripts_and_sequences/ImmunoPDB.py -i 999-coot-1.pdb -o test4_999.pdb -s imgt --receptor tr
/sc…
-
Hi,
I tried to install IGoR first but found that after some complications on the commandline it was probably easier to use this package. Anyway to be able to do anything I need the gene templates fro…
-
Does your Trust4 reference file for the human genome include pseudogenes? If not, do you have any idea on how I could include those genes in?
-
hisatgenotype doestn't works if HLA sequence files from the repo are substituted to new ones from IMGT-HLA database (version 3.30.0)