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I am testing different breeding strategies (mass selection, pedigree, genomic selection), and I would like to obtain inbreeding levels for each selection round and genetic gain. I am new to using Alph…
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Hi Timothy,
I have a question concerning the inbreeding estimates in your package.
if I set "allow.inbreeding=T" in the coancestry function, only inbreeding estimates for two methods are calculated:…
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The inbreeding value (T/F) is a measure of homozygosity for locus 2. The proportion of TRUE values will give the inbreeding coefficient.
I should be able to plot changes to this coefficient over ti…
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Hi community,
I wonder if xpclr method can apply on inbreeding plant species, although i know it was originally designed to dectect the selection of human genome.
Besides, i want to know the inf…
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As discussed in #2888, usually "genetic relatedness" includes the self comparisons. (This makes sense if (a) you're computing the covariance matrix of additive traits, (b) if you want to know the futu…
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Hello,
I want to obtain heterozygosity values for my individual samples. I have a doubt regarding on how to account for HWE when doing this.
From what I have seen, the standard procedure is to …
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Hi!
I am working on a dataset where I would like to get the averaged inbreeding coefficient by population, to compare with previous published estimates.
I used a first method where I ran ANGSD …
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Thank you for providing this! It is working great for the simple test cases that I am working with but is returning 0 for a complicated pedigree [example_dict.py.zip](https://github.com/user-attachme…
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Hi Timoty,
I have a dataset of 730 individuals from 13 populations which were genotyped for 13 loci (I do have some missing data). populations have different sample sizes (from 7 individuals up to …