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Visualize interactome fonctionne correctement en local (après quelques modifications pour fonctionner sur la dernière version de galaxy) :
![image](https://user-images.githubusercontent.com/393363…
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Using TALON v5 installed `python setup.py install` on HPC running Debian
Using `python version 3.6.7`
```
talon --f /analysisdata/fantom6/Interactome/ONT-CAGE_TALON_Callum/F6_interactome_config…
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Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
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**Describe the problem**
String database has a large number of known PPIs. We currently have HuRI, but would love to add this to our PPI task as well. This would be a relatively simple task for new u…
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Hi Emre,
I cannot execute the code of proximity.... This code have to execute in python2, otherwise it do not work. However, after introduce the input toy.sif, and remove from toolbox (I execute th…
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Hi guys!
it's really time to finish this project. We need to publish it soon. By default cytoscape 3 allows to load an interactome from some organism. then also you can import a whole interactome or j…
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Make sure that the PR code can handle the undirected graph. In the PCSF outfile, the edge (u,v) may be actually represented as (v,u) in the interactome.
When I convert the interactome to an undire…
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- global mapping of small RNA interactome: http://www.cell.com/molecular-cell/pdf/S1097-2765(16)30413-0.pdf
-ncRNA-mRNA interaction: shuffled controls consistently more stable than real interactions.…
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I used this command:-
nohup circmimi_tools interactions -r /Drive1/interactome_circRNA_miRNA_mRNA/ -i /Drive1/interactome_circRNA_miRNA_mRNA/checking_circRNA/E6_coordinate.tsv -o circ_interactome -p …
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@pabloech said "Once Hsp90beta interactome (P08238) didn't give any GO slim clustering." see https://github.com/PPiMapBuilder/PPiMapBuilder/issues/45#issue-70422685
This needs more investigation.