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It seems the following page is inaccessible. (http://updates.iontorrent.com/tvc_standalone/README.txt).
I also tried to build the TS/tvc docker and found that we can't download packages from http:/…
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Implement support for IonTorrent data in the pipeline, should largely be the same as Illumina with some quirks of quality score issues
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### Description of bug
When trying to assemble DNA viral samples using the flags `--metaviral` and `--iontorrent`, spades won't generate any contigs, even when running with positive controls which …
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### Description of feature
## Idea
454 sequencing is probably not as much used for amplicon sequencing as Illumina MiSeq nowadays, but it was popular some time ago and is still used. It would be g…
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Hi, We are working with a parasite and we have data from a IonTorrent and a PacBio (So, no illumina reads). Could be possible to use masurca with IonTorrent + PacBio ?
Thanks in advance
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### Description of bug
(bio) zhisong@zhisongs-MacBook-Air spades % bin/spades.py -s ../accuvirnew/bad_nano/hiv_50_2k.fastq -o testfasta --isolate
== Error == /Users/zhisong/Desktop/accuvirnew/b…
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It turns out that our default RNA-seq pipeline happily analyzed IonTorrent or ABI data and produces seemingly reasonable data
[GSE67124](https://gemma.msl.ubc.ca/expressionExperiment/showExpression…
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I would like use Unicycler for hybrid assembly of Ion Torrent and nanopore data. The default assembly option in Spades is not appropriate for Ion Torrent error correction/assembly. Ion Torrent data …
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I have some older data from minion and Ion Torrent. The default analysis worked pretty well but spades has an optimised setting --IonTorrent is it possible to run Unicycler with this (some how - not a…
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### Description of bug
Hi!
I'm a smidge baffled and can't find a solution online.
I'm trying to assemble five IonTorrent single read datasets. The read correction worked just fine and then when …