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**Are you using the latest release?**
1.8.13
Hi there,
I am using funannotate to convert a gff3 to a .tbl file, then to convert the .tbl file to a .gbk file, and then to spit out the transcript…
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Hey guys, thanks for the tool! Very useful!
I'm a bit confused about the "num_reps" parameter. And also who it relates to the event probabilities.
I have implemented an alternative splicing (AS)…
ls233 updated
5 months ago
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Previously, our team was not able to successfully output a gene count matrix from Stringtie. I was able to run Stringtie on Andromeda and output a gene count matrix but many of the rownames are design…
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Please help
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@jpfeuffer sometimes the pipeline fails in the id part because of the peak-peaking step by the ThermoRawFileParser. Would be great to "restart" the pipeline, same parameters but with the openms peak p…
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Hi
Will nanotail be able to support tailfindr output files ?
Kind Regards
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Here is what the nextflow version is currently outputting in a transXpress_results folder in the working directory of the pipeline execution (using rnaSPAdes as an example):
```
0226_Chattonella_sub…
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Hello!
I am trying to analyse differential gene expression in 83 samples split up into three groups following the protocol described by Pertea et al., 2016 (doi:10.1038/nprot.2016.095).
Now I h…
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**Is your feature request related to a problem? Please describe.**
VariantValidator, when having received too much work for one request, times out. This happens when, e.g.,
1. A large variant is sub…
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Hi
I have an error when running:
```R
txi = tximport(files, type="salmon", txOut=TRUE,
countsFromAbundance="scaledTPM",ignoreTxVersion = FALSE)
d = data.frame(sampleID = c…