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### Description of bug
Hello！
I tried to use Spades to assemble metagenomes on HPC by submitting Slurm scripts. After running the program for a period of time, the log file showed the following erro…
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### Description of bug
Hi!
I am assembly soil samples, there has some samples , i try to set different params for example different memory or threads, but still not solving.
best,
wanli
### s…
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### Description of bug
If I ignore this warning "mimalloc: warning: unable to allocate aligned OS memory directly, fall back to over-allocation (16538140672 bytes, address: 0x7f31c5449000, alignment:…
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Hi guys,
I've run into an issue running SPAdes in metagenomic mode. Filtering singleton k-mers of the forward reads takes only a few minutes, but then SPAdes gets stuck on the reverse reads file fo…
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Hello, I've used SPAdes to assemble my metagenomic datasets however two of my samples are getting stuck in the exact same place repeatedly. I was able to assemble all my samples using megahit without …
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I can load my fasta and run the indexing function fine, but it simply produces nothing. The outpout looks like below in my terminal:
[build] loading fasta file Homo_sapiens.GRCh38.cdna.all.fa
[bui…
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### Description of bug
Hi, I am assembling my sequencing data on a cluster but this step takes me more than 12 hours. Is there any problem with it?
### spades.log
[spades.log](https://github.com/ab…
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Hi,
The lengths of the features (or k-mers) I'm interested in are different. It didn't return any warning in the 'index' processing, but I got an error message when I ran the 'merge' module.
`[ERR…
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```shell
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You are running Scasa v1.0.1 using docker ....
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Hi Team,
I am working on a project wherein I have to count k-mers from genome assemblies. I, therefore, have to run this across multiple files. As per the documentation (txt: A plain text file with…