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Hi,
I have met with another ignoring error, here is the log:
0.982908 k-mers per position
14994 DB matches per sequence
8 overflows
0 queries produce too many hits (truncated result)
58 sequen…
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I have used direct RNA-seq ONT long reads data. while running the rnabloom2, I got an error in the assembly step. I am not getting the reason behind it. could you help me out? I have pasted the comma…
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### Description of bug
Hi, I am assembling my sequencing data on a cluster but this step takes me more than 12 hours. Is there any problem with it?
### spades.log
[spades.log](https://github.com/ab…
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Currently workflow does k-mer counting on the individual fastqs from each bam, but then goes on to combine the fastq. Should k-mer counting be performed on the combined fastq or the parts?
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Hi
I am running KmerDedup on my highly duplicated assembly (created using hifiasm) as the many sample were pooled together (one organism). KmerDedup has successfully generated the shell script. Step0…
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Hi Team,
I am working on a project wherein I have to count k-mers from genome assemblies. I, therefore, have to run this across multiple files. As per the documentation (txt: A plain text file with…
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### Description of bug
I tried to assemble metagenome reads via SPAdes (--meta), yet only the first k-mer can be assembled successfully without other manipulations. During the second k-mer assembly…
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Hello!
I noticed on your website that there are plans to potentially incorporate unique kmer counting into Kraken2, but however, it is not currently guaranteed. Therefore, I was wondering if this …
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ref #51
Mo -
so, khmer pre-allocate the memory even there's no need for it?
titus:speech_balloon: 9 minutes ago
Yes - after all, how do you know how many kmers there are if you haven’t read t…
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See motivation: https://github.com/dib-lab/dib-lab/issues/69