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Hi Silas,
I have a question regarding the output written to the 'results' folder:
(1) KO.tsv
Structure is:
MAG K00001 K0002 etc..
MAG1 1 1
and the file written to the G…
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* eggnog2gbk version: 0.0.7
* Python version: 3.8.2
* Operating System: CentOS Linux 7
### Description
Hi, I'm trying to use your tool with my output from eggnog-mapper v2
### What I Did
I…
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Hello
Thanks for the exceptional contribution of the pipelines I'm trying prove my own cycle of catabolism, It's possible do it? and how? .
Thanks for your advice....
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The viruses identified by genomad weren't annotated as virus sequence by VIBRANT?
Hi,
when I input the virus sequences identified by genomad to identify AMG genes by VIBRANT(1.2.1), there wasn't any…
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At MBL STAMPS 2022, a lot of learners requested functional annotation/abundance estimation using sourmash. While we're not quite there yet with sourmash alone, it would be fairly straightforward to ad…
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I'm investigating biofilms living on plastic debris. I want to find out if there is differential expression of certain KEGG Orthologs (KO) at week 0 and week 7 of my microcosm experiment (as well as b…
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Hi Carlos,
First off, thank you so much for putting in all of the work to develop this tool. I have been looking for something similar to this for years and I finally need to publish some papers …
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Right now, any id that instantiates a class should have a curie in the set of id_prefixes class. This needs to be incorporated into the id loader
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Hey everyone,
I am a beginner in bioinformatics, and I am currently working on the annotation results from eggNOG-mapper (emapper-2.1.9) to conduct an enrichment analysis with the information from t…
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We are having a bit of trouble organizing controlled vocabularies in the CV and DB tables. The problem comes in with the "short name" (e.g. GO, SO, etc...) for the vocabulary which gets stored in the…