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Hello,
I have been trying for the last two days to install lefse on a cluster at my university. I have verified that all R libraries have been installed along with conda / python / etc. However, ev…
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Hello, microeco has very conveniently implemented lefse analysis, but I have the following two questions.
![PixPin_2024-09-14_11-32-39](https://github.com/user-attachments/assets/59f73bdb-439a-4594-8…
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Hi,
I used the microeco package for LEfSe analysis, but the result is different from the package of LEfSe result, and the LDA value is much larger, is it because I did not pay attention to other d…
wfgui updated
1 month ago
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Say, a `palette` option that can be:
* "LEfSe" (current, default)
* "colorblind"
* "greyscale"
* any two-character vector of colors
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I met something wrong when i run the 'lefse_run.py' in lefse1.1.2_r4.0.3_py3, like this
but when I run in python2,it worked. looking forward for your reply!
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@asyakhl what is the historical reason for the naming of the lefser() `blockCol` argument? This name, and the help for the argument:
> character(1) Optional column name in colData(relab) indicating t…
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Hi! I was using microbiomeMarker for a long time, but I've recently update the package and I find a problem.
I usually make the analysis in this way...
```
mm_lefse_Phylum
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Dear friends:
Hi! Thank you so much for developing this amazing and useful package!
However, I am encountering an issue with the cladogram generated by the `plot_diff_cladogram` function during m…
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Hi! Great to be able to run LefSe in R - thanks!
The R implementation doesn't seem to allow a comparison of more than two groups. Is there a plan to add this functionality?
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Hello,
First of all thank you for all of your hard work developing such an informative and intuitive tool.
I have been successful in running the LEfSE analyses for some of my data, but unfortunat…