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I am trying to run this code for a mouse dataset (https://ccc-protocols.readthedocs.io/en/latest/notebooks/ccc_R/QuickStart.html):
```
# Generate list with ligand-receptors pairs in DB
lr_pairs %…
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Hi !
There seems to be an issue with the calculation of the intramolecular energy for pose rescoring. The term (4) is always different from (2). This discrepancy arises from the terms involving fle…
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Hey, first of all, thanks a lot for this great package!
However, I had some issues following your Bivariate Ligand-Receptor Relationships tutorial. When running the following code from your tutori…
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Hi, i followed the instructions to install and run.
`funfun -its dna-sequences.fasta -type its2 -out ejercicio`
and everything looks to be working, but something that makes me conflicts are the …
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**Reported by anhi on 15 Jul 38810925 03:06 UTC**
The code by Silke Jansen for LIGPLOT-like functionality should be merged into master.
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Hi there
Can explain what --pharma option does? I find --template option will bias docking toward pharmacophore defined in ph4 file. But I cannot find how --pharma option work. Any example can als…
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Hi,
I have mouse data and therefore tested if its possible to run Celltalker using a different database than the ramilowki DB.
A nice overview of available interaction DBs are here: https://githu…
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Hi Dr. Jin,
I have single cell data from two different organs, A and B, respectively. I intend to find the ligand-receptor interaction pairings between the two organs. Therefore, I have directly me…
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**Describe the bug**
I am trying to run CellChat and I am getting a AttributeError: 'SparseCSRView' object has no attribute 'A'.
**To Reproduce**
Here is the code to call the method. The "adata…
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Dears,
First, thanks a lot for this wonderful package that helps me to analyse and understand more about my scRNA data.
I have a question regarding the CellChatDB, it contains an interaction table t…