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Capturing new "Contributor" field on staging (for lightsheet data submission).
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Hi Eric,
I manage to established the pipeline using flowdec to deconvolved the lighthsheet images, but I am observing that for each channel and block the tensorflow enviorment is reload. Is there …
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Hi,
I realised a pretty significant bug in the Zeiss Lightsheet CZI reader. It does read the sizes of the individual stacks wrongly (assumes the biggest stack size for all of them), which is a huge p…
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Requested at ELMI 2018
Don't forget lightsheet microscopes.
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To support lightsheet, it's helpful to control exposure time and slit width live.
For the orca fusion this is
- [x] acquire-project/cpx#42
- [x] acquire-project/cpx#43
- [x] acquire-project/cpx#…
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Broken link at the README file here: https://github.com/openUC2/UC2-GIT/tree/master/WORKSHOP/LIGHTSHEET
![image](https://user-images.githubusercontent.com/3259326/208492991-118ab82f-4d74-462e-9b07-…
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We have been building a 3D anatomical template for one of our lightsheet systems. We find 3D mask-based alignment does a great job but would like to refine the transform with a set of manually placed …
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Hi,
I realised a pretty significant bug in the Zeiss Lightsheet CZI reader. It does read the sizes of the individual stacks wrongly (assumes the biggest stack size for all of them), which is a huge p…
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Hi,
I am currently trying to use bioformats (and python bioformats) to read some CZI files generated by a Z.1 lightsheet. The series is a tiled imaging of a single channel and was done with a dual …
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Hi,
bioformats fails to extract correct timestamps from CZI files produced by the Z1 light sheet. If i understand it correctly the timestamps (DeltaT) should report seconds elapsed since the beginn…