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**Describe the bug**
When using CellViT to segment some WSIs under 20x magnification scale, the result showed in QuPath is incorrect. However, when under 40x magnification scale, they are correct. Bu…
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when I run find_stain_index like the example code:
w_est = htk.preprocessing.color_deconvolution.rgb_separate_stains_macenko_pca(imInput, I_0)
Perform color deconvolution
deconv_result = htk.prep…
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This feature request was mentioned in issue https://github.com/EIDOSLAB/torchstain/issues/3. However, I believe it would be better to track it in a separate issue.
The idea is basically to introduc…
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Hello, @sophiajw!
Would it be possible to share the model and inference script to easily test and use the model?
I am developing an open-source platform called [FastPathology](https://github.com…
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Problem: The exact problem is just because when Omar tried to use his new e2e pipeline to run the same targets but observed different results. And he found with his e2e he got more features after tess…
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Hi! What a great resource, thanks for sharing!
I was wondering if you could specify a bit more on the structure of the Clinical Data table and slide Data table.
I guess the first should have someth…
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I had some ideas of feature requests which could greatly improve the usefulness of your tool.
1. Enable GPU mode (seems to only run on CPU as of now)
2. Enable batch mode (seems to assume that the…
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Hi, I've used the PathML StainNormalization transform to varying success in my pipeline.
I used the macenko method to normalize images at 1000 x 1000 px tile size. However, as I reduced the tile size…
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```
/users/sli59/anaconda3/envs/torch_lester/lib/python3.7/site-packages/staintools/stain_normalizer.py:41: RuntimeWarning: divide by zero encountered in true_divide
source_concentrations *= (self…
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Hi,
I am sorry if my question is trivial but I have trouble using this package with the tensorflow backend.
Using torchstain 1.2.0, I have no problem performing a Macenko normalization with numpy. B…