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We have previously discussed adding metagenomics compatibility by running fly in meta mode and doing genome binning.
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Hello everyone,
I've used your tool in different metagenomics project and now, as suggested by my supervisor in a WGA, I've used as a decontamination tool after scaffolding.
Following, I've tri…
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Hi,
I individually assembled 30 metagenomic soil samples collected from different sites cross the country. Is it reasonable to mapping all samples to a specific assembly to calculate coverage depths …
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### Description of bug
Hi,
I am trying to run binspreader with a set of binned scaffolds (binned using metawrap). The program works fine using the default settings, however, when I run it with --pat…
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**This is the main issue for adding metagenomics content to the workshop material**
The plan is that we have most of the material first in this repo and then we fork it for the GHPP SGS course end …
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Modifying ComBEE session on binning:
- Motivations, background, what can you learn
- Terminology
- General workflow to keep up through the workshop
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Hi! I'm working with metagenomics data, I have both long and short reads (single end) at my disposal, and before finding your tool my plan was assembling (with metaflye) and then binning (considering …
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Hi,
we have sequenced marine samples using the Nanopore sequencers and I am currently testing methods to assemble the resulting sequences. I just stumbled upon your article and would be very intere…
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Reply with learning objectives (and challenges to test them, if possible).
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Hi Oskar,
For the binning of the SPAdes individual assembled contigs.fasta, I directly set the location of each contigs.fasta and its corresponding *.bam file. It runs perfectly.
[config25 copy.…