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We have previously discussed adding metagenomics compatibility by running fly in meta mode and doing genome binning.
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### Description of bug
Hi,
I am trying to run binspreader with a set of binned scaffolds (binned using metawrap). The program works fine using the default settings, however, when I run it with --pat…
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Hi,
I individually assembled 30 metagenomic soil samples collected from different sites cross the country. Is it reasonable to mapping all samples to a specific assembly to calculate coverage depths …
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**This is the main issue for adding metagenomics content to the workshop material**
The plan is that we have most of the material first in this repo and then we fork it for the GHPP SGS course end …
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Hi! I'm working with metagenomics data, I have both long and short reads (single end) at my disposal, and before finding your tool my plan was assembling (with metaflye) and then binning (considering …
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We plan to expand our catalogs of tutorials for whole-genome microbiome data analysis.
Here are some ideas we will implement:
- Expand the introduction slide deck to add more overview of the diffe…
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I assume that npScarf is designed for Single species bacteria. Anyhow, I want to check how it works for my bacteria in metagenomics sample. With Illumina MISEQ data, I did the assembly with SPADES …
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[Would the Bifrost (I believe it is actually pronounced very similarly to beef roast) colored deBruijn graph structure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02135-8) pro…
nmb85 updated
3 years ago
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When running the binning module using in the following way:
`
metawrap binning --metabat2 --maxbin2 --concoct -t 40 -m 128 -l 1000 -a $infile -o $outdir $fwd $rvs`
the runs stops after finishing …
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Hi Oskar,
For the binning of the SPAdes individual assembled contigs.fasta, I directly set the location of each contigs.fasta and its corresponding *.bam file. It runs perfectly.
[config25 copy.…