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Hello Developers,
Thank you for melon,
I am working on nanopore shotgun metagenomics data and i am using melon.
I want to include fungii and virus genomes as well in the analysis as currently…
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Hello developers,
Thank you for the tool.
I am working on shotgun ONT metagenomics data and came across your tool and bioarxiv paper.
I ran lemur but i am struggling to find information on ma…
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Study, metadata, and biosamples submitted via NMDC submission portal
- [x] Ingest into mongo dev & test (https://github.com/microbiomedata/issues/issues/582 )
- [x] Ingest into mongo prod (https:…
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Dear authors/maintainers,
First off, thank you for developing and maintaining this wonderful tool! Your efforts are much appreciated.
I would like to inquire about an issue I am facing. Specifi…
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Hi, can I use Transposome for annotating transposable elements from paired-end metagenomics data of complex microbial communities? If so, what would be the repeat_database in the config file?
Thanks!
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Hi,
I just installed Kneaddata 0.7.3 into an empty Conda environment.
Running a short demo using data provided by the tool authors:
`kneaddata -db examples/demo_db -i examples/demo.fastq -o …
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v2.10.1
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
### EPI2ME…
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**Supervisor:** Bérénice Batut
**For degree:** Bachelor
**Status:** Open
**Keywords:** Metagenomics, microbiome, data analysis, training
# Global context
Emerging and powerful technologies li…
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I want to extract euk genes/proteins from metagenomics data. I want to build a gene/protein catalog for euk genes.
Seems that metaeuk is a reference guided approach ( based on mmseq2) and Plass is a …
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Hello,
I'm Sebastian, working on my MSc thesis, aiming to create a knowledge graph of the wastewater treatment microbiome. We're using Netcomi for constructing Microbial Association Networks (MANs)…