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Hi,
Thanks for developing such a promising package !
I just started using it and I'm having an issue with the betaHMM function. When using methylation data other that those provided with the pac…
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* **Term to be merged: Provide GO ID and term label**
GO:0106005 RNA 5'-cap (guanine-N7)-methylation
GO:0036265 RNA (guanine-N7)-methylation
* **Which term do you propose this term merge int…
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GO:0044030 regulation of DNA methylation
GO:1905642 negative regulation of DNA methylation
GO:1905643 positive regulation of DNA methylation
Annotations are here: https://docs.google.com/spread…
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example: https://pubmed.ncbi.nlm.nih.gov/37081487/
[pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls]( https://pubmed.ncbi.nlm.nih.gov/37081487/)
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As suggested by a user:
> It would be great to have a genome browser for methylation data where you could group by clinical data to get methylation averages visualized with gene models and other an…
inodb updated
4 months ago
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Hi Levi and Marcel,
I was wondering if it would be possible to implement a simplified methylation data set. As you know the raw methylation data is quite unwieldy so I condensed it to a matrix, whe…
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Dear all,
The transcription group is proposing to obsolete GO:0061715 miRNA 2'-O-methylation, since it is a molecular function. Consider replacing with GO:0090486 small RNA 2'-O-methyltransferase …
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Hello!
I have used this program to extract the DNA methylation levels from data and have bam outputs. I am trying to analyze where methylation is occurring on the genome, but the annotations of the…
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Hello,
Thank you for creating minfi!
It is super useful!
Is there an hg38 version of an Illumina Human Methylation Array 450K annotation package?
Like this one: IlluminaHumanMethylation450kanno.…
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mRNA methylation is now gone, but it seems odd that we have the other methylation terms.
@pgaudet Should this branch have "do not annotate" added, pending obsoletion?