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Berkeley schema now supports multiple sequencing runs via parthood on DataGeneration records. ETL code which generates records for subclasses of DataGeneration need to be updated to model this.
Exa…
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Hi,
I'm attempting to generate synthetic LC-MS/MS data from complex communities of bacteria. I tried a community of 40 different bacterial species using Prosit (Oktoberfest) and Synthedia, but the …
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One of the changes in modeling in berkeley was to support projects that were had multiple instrument runs (of the same type) which should be analyzed together. Records are linked with part_of, for the…
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Hello,
Kind of a weird 'issue' as it's more a 'forum like' topic.
I am completely new to JSDMs and have some questions about some thoughts I had about how to use them.
For instance :
- How i…
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**Submitting author:** @wsmets (Wenke Smets)
**Repository:** https://github.com/LebeerLab/tidytacos
**Branch with paper.md** (empty if default branch): master
**Version:** v0.3.0
**Editor:** @diazrena…
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- title: '16S: A comprehensive dataset on spatiotemporal variation of microbial plankton
communities in the Baltic Sea'
- GBIF: https://www.gbif.org/dataset/4e15ad17-be62-4101-8cc2-9f315e27f1dc
- …
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- title: '18S: A comprehensive dataset on spatiotemporal variation of microbial plankton
communities in the Baltic Sea'
- GBIF: https://www.gbif.org/dataset/6bce37d6-a682-4cca-89c4-7464cefa65e9
- …
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Catalog of climate-microbiome relationships
We will build a Linked Data component within the NMDC Data Portal for exploration of mechanistic microbiome processes underlying environmental processes,…
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Hi Daniel,
I'm calculating MIP and MRO based on MAGs assembled from different samples using SMETANA. The number of MAGs assembled varies between each metagenomic sample. Can I compare MIP and MR…
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Catalog of climate-microbiome relationships
We will build a Linked Data component within the NMDC Data Portal for exploration of mechanistic
microbiome processes underlying environmental processes, in…