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Dear curatedMetagenomicData Maintainers,
Considering that GTDB taxonomy is a cornerstone for microbial genomics research, I was wondering if there is a possibility to also provide GTDB taxonomy lab…
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Hi,
I really like your tool and love that is is easy to use. When reading the Microbial Genomics publication, I get the sense that BacGWASim can simulate genome using user-provided annotations. Howev…
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This looks great! I think it might be good to add a references or refs folder. For genomics/microbial ecology project we often use references to map our data against or for classifying sequences. We f…
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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** NovaSeq X v1
**Protocol:** No…
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:grin:
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### Description of bug
Hello Good day. I am Paula Maza and currently working on a microbial metagenomics dataset. I am new to shotgun metagenomics and hoping to learn along the way. I am using SPAdes…
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https://github.com/kbase/KbaseAppCatalogStatic/blob/59a1083ac0741d8ca9fde1a4d349ec13b5d02353/templates/index.html#L7
There's a few basic things we can do for SEO. One of them is to add a Meta ta…
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Done:
**Food**
https://docs.google.com/spreadsheets/d/11TXjYjJelW26wPHQw6Fzl7rtHc-LzCuDihbzfktuC78/edit?usp=sharing
**peptide standard peptide sequences**
https://www.lifetechnologies.com/orde…
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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** WGS PCR free v5
**Protocol:**…
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This might be a poor exercise but I'm trying to understand the methods of paper and if it makes sense to adapt my linear-based workflow with PCA to non-linear manifold methods; thought trying out diff…