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When one searches for cross-correlation, they'll see that it's mostly related to time series correlations. That can become a font of confusion for beginners.
Might "cross-association" reflect bette…
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Mention in some suitable chapter that also mediation analysis is supported by mia.
Or: exemplify the new mediation functionality in mia with a more detailed example. Avoid duplicating what is alrea…
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Hello, a newbie summer intern here, wanted some advice!!
While I was making some grammatical and technical edits to the differential data analysis(DAA) chapter, I was wondering how it will be like …
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Hello Prof. Yu,
I find your clusterProfiler (http://yulab-smu.top/clusterProfiler-book/) a useful tool and tried to follow the tutorial.
Since I am working on the gut microbiome and have KEGG pathwa…
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**Is your feature request related to a problem? Please describe.**
At the moment, Hintikka data is used for basically all analysis in OMA book. However, I see a problem in the [MOFA section](https:/…
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Hi,
I'm following the ["Workflow for Microbiome Data Analysis"](http://web.stanford.edu/class/bios221/MicrobiomeWorkflowII.html) to analyse some 16S and ITS datasets. I'm unsure about the effects t…
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Consider structure of OMA. How much general information there should be about microbiome data science (not directly related to miaverse)? Should we structure the book differently? Currently it seems t…
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Hi,
I am trying to run SPIEC-EASI with a phyloseq object containing the metagenomic info of prediabetic individuals. I have followed this tutorial: http://psbweb05.psb.ugent.be/conet/microbialnetwork…
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