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Should expand these terms to enable reporting of the recovery of other taxonomic marker genes, not just 16S?
## Current term details of 16S recovered [[MIXS:0000065](https://genomicsstandardsconsor…
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While attending the iSample meeting, Neil Davies suggested, and the group concurred, interest in the GSC developing a rock-MIxS package, to capture the rock specific metadata.
Check out the https:…
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See https://linkml.io/linkml/schemas/linter.html#recommended
And the description should follow some agreed-upon style guidelines
```shell
linkml-lint src/mixs/schema/mixs.yaml | grep "does not …
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see
- https://github.com/perma-id/w3id.org/pull/4003
@MattBlissett has requested a patterned redirection which we are accepting and two static redirection.
The Genomic Standards Consortium is g…
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We should be able to report all `env_broad_scale`, `env_local_scale` and `env_medium` values in two dimensions of contextuality:
### MongoDB or SubmissionPortal
- prod
- dev
- sandbox
- napa
-…
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At the top level of mixs GitHub:
to develop a .md documentation file to explain the upper level structure of the directory.
To explain the - end user directories and the developer directories…
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On this page : https://genomicsstandardsconsortium.github.io/mixs/
the names of the MIMARKS checklists is incorrect:
MIMARKSSpecimen | Minimal Information about a Marker Specimen: specimen
MIMA…
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The following concepts are defined by MIxS, not EnvO, and the acceptable values can from ontologies other than EnvO.
The capitalization is inconsistent, too.
- Broad-scale Environmental Context
…
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```shell
linkml-lint src/mixs/schema/mixs.yaml | grep "standard_naming" | grep -v "Permissible value"
```
> warning Slot has name 'HACCP_term' (standard_naming)
> warning Slot has name 'I…
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Request from Lisa Karstens
I’ve been working on the urobiome mixs package.
I’ve noticed several terms that I typically work with are not well represented in the human disease ontology
Fo…