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* link to support ticket: [#2024110760001157](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=175358)
* website: https://colabfold.mmseqs.com/
* installation docs: https://co…
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Everything seemed to be going smoothly for a few hours until the very end and it couldn't make the output tables.
Invalid database read for database data file=hecatomb.out/processing/mmseqs_aa_prim…
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* pharokka version 1.7.3
* Python version 3.9.16
* Operating System debian 11
### Description
Dear George,
i have an issue with mmseqs:
pharokka.py \
-i /home/yana/download/Escherichia_phag…
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## Expected Behavior
I'm running cluster unit tests on a very small file. I'm trying to control the memory usage with `--split-memory-limit`, but it errors unless I give it at least 9GB of memory.…
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I am trying to integrate the new GPU-accelerated search in colabfold_search. From what I can see, only `search` and `easy-search` are GPU-accelerated. However, the `colabfold_search` alignment protoc…
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## Expected Behavior
mmseqs createindex "colabfold_envdb_202108_db"
## Current Behavior
Not enough memory to keep dbreader/write in memory!
Memory limit: 14845796352 dbreader/writer need: 2275…
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## Expected Behavior
I tried using easy-clust to perform clustering to generate smaller representative subsets from Uniref50 (Uniref40, Uniref 30, Uniref 20, etc.)
## Current Behavior
The cluster…
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Hello every one,
I'm, trying to run the tool. However, after creating the DB via the mmseqs2 by my download NR.fasta that I had before, I run the homology search and I failed, and the feedback like …
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Hi phil@philarevalo
I meet a problem when running "bash snakefile.sh" in flexible_genome_sweeps. the following is the error.
Waiting at most 5 seconds for missing files.
MissingOutputException in …
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* pharokka version:1.7.3
* Python version:3.10.14
* Operating System: linux
### Description
Hi!
When running pharokka on meta mode it returns a funky error about duplication of key which look…