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Add these:
- [lme4breeding](https://cran.r-project.org/package=lme4breeding) ("Kinship-augmented models"; note `pedigreemm` is listed twice in that section!)
- [dmm](https://cran.r-project.org/pac…
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## Preface
We want to implement a feature that allows the various features of Biome to tap into information regarding other files. At the moment, features like lint rules don't have access to infor…
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# Analysis
## Current State
As of v 1.9, groups ... are not groups.
A group is a trait shared by different objects.
The trait is stored in an array, that lets us stack and unstack traits, …
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Hi Prof. Xijin,
I am proposing to use iDEP for pathway analysis in a multi-omics model. We have RNA seq gene expression, DNA methylation and genetic variants SNPs data. I am wondering if I can use…
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# Association
- [ ] [A simple, consistent estimator of heritability for genome-wide association studies]( https://www.biorxiv.org/content/biorxiv/early/2017/10/17/204446.full.pdf)
- [x] [Multivari…
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The article I came across that utilized MTAG left me feeling very puzzled about whether I used the MTAG is correct.
1. As per my understanding, if I were to employ MTAG to simultaneously input fo…
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Hello Everyone,
Is there any way of doing multi ROI plot with a customized ROI option?
Thanks
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# Updates from last week
- FoRTE
- Lots of reading, focusing on UMBS ecology and natural history, and general ecological succession
- Cleaned up project code; have rough drafts of figures…
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# Updates from last week
- FoRTE
- Meeting presentation and Git tutorial - done
- Some analysis of ED parameters
- Working PEcAn multi-node setup -- can submit more ED runs more efficientl…
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This was originally in pull request #74 started in June 2017. This pull request is now wildly out of date and needs to be closed. However, the idea and comments are still relevant, perhaps more releva…