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Hello,
I've been going through the documentation and tutorials for `lamindb` and this is a very easy to use, and _useful_ project. I plan on using it for my analysis work (Multiplexed imaging canc…
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## Objective:
Implement a feature on the HTAN portal to display harmonized target names for multiplexed tissue imaging data. This aims to assist researchers in easily locating and identifying dataset…
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Hi,
In the article 'MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging', I noticed that the author also processed publicly availabel imaging mass cytometry (IMC) d…
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From Parisa Nejad's [current metadata](https://docs.google.com/spreadsheets/d/1coPpOVZRhBVRxGBfDCxr6-6nG-nP7Sb1JXk-vdtzXO8/edit#gid=136855131) spreadsheet:
- Possible duplicated values are color-code…
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The MC2 Center data model does not currently enable assay-specific metadata to be recorded. Adding these models is a critical part of supporting data sharing and reuse. Potential models to add were or…
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### Motivation
With this issue, I would like to discuss whether ngff could relax the omero metadata requirements by making "visualization specific" parameters (["window"](https://github.com/ome/ngff/…
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Hello,
I am using Mesmer to segment large images from CODEX multiplexed imaging. This has worked well for all of the data, but since beginning to generate images of larger size, we are running int…
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With the increase in ultra-high, multiplexed imaging (e.g. CODEX), the ability to easily look at files containing dozens of channels becomes a valuable feature.
I propose adding a feature that all…
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Based on @emquardokus's feedback from https://github.com/hubmapconsortium/antibody-api/issues/166#issuecomment-2083037998
>It would also be great to have an introduction to what the AVR website is …
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Hi all,
Thanks for the hard work on this package and overall on ome-ngff. We are very excited to learn that Dask arrays are now supported!
We have 4D data of shape `CZYX`, where typically `c=17`…