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Hi,
I wish to parse .mzData.xml files from Agilent to extract a RT x m/z matrix, I've correctly installed the mzR package but I obtain this issue: Error in .mzRBackendFromContent(x) :
Could not …
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(discussion with @adafede)
... to handle mass spec output, wether raw or annotated throughout the pipeline.
This could also facilitate the acception of preprocesses data according to other resear…
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As discussed at the HUPO Busan Bioinformatics Hub, it would be great to compile a list of all the available mzML (and mzMLb?) parsers for different programming languages.
Off the top of my head and…
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A few of the PRs I still have open and am working on have all ran into this issue, and I need some input from you guys to resolve it.
In tests/validators/test_validate_test_data.py there are tests…
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I noticed this a while ago, umxSummary often fails with:
```r
#Error in names(parameterTable)
dplyr::mutate(ethnicity = rep(LETTERS[1:5],140))
dzData = subset(docData, zygosity %…
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You may want to view this on GitHub since I have embedded tables and such. https://github.com/MoseleyBioinformaticsLab/MESSES/issues
I am going to start with a short description of how ISA assays w…
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Originally opened by @sneumann on althonos/mzml2isa:
**Steffen**:
Hi, there could be non-trivial experimental designs which are a challenge
to creation of the sample table, e.g. for technical replica…
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Hi,
I'm trying to enhance peak detection performances to an existing [package](https://github.com/agnesblch/MetIDfyR) by integrating super-fast chromatographic peak detection capabilities of xcms. …
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During the runGC with CDF files and comparing with a DB, we obtain this error :
```
Error in x[, settings$timeComparison] : incorrect number of dimensions
Calls: runGC ... match.unannot.patterns -…
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I updated to `mzdata` 0.31 in `rustyms` and it fails during compilation (see below). I am running rust 1.81 (latest stable). What am I doing wrong, as mzdata 0.31 obviously built successfully for it t…