-
Hello,
Thank you for making this program.
I am hoping to resolve some haplotype switch errors in my regions of interest, and I think Methphaser would be very nice to try out.
My regions of int…
-
### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
wf-basecalling v1.4.2-g9c0f9db
### Workflow Execution
Command line (Local)
### Other workflow execution
_N…
-
# Issue Report
## Please describe the issue:
I am working on epigenetic analysis for bacterial samples using Oxford Nanopore sequencing (FLO-MIN114), and I’m transitioning from Tombo to Dorado for…
-
-
Hi, I am trying to reproduce the result of apa analysis of nanopore to use for further research.
I am following the pipeline of Simpson_Barton_FPA_NLRs github code.
Now, I have bam file and trying…
-
## Is your feature request related to a problem? Please describe
At the moment there is an input option to use only [short reads](https://nf-co.re/mag/usage#direct-fastq-input-short-reads-only).
…
-
Write a cheatsheet page that summarises the steps for generating the consensus assembly.
Maybe this could be written as a sort of protocol:
- Before you start:
- type of data (nanopore or ill…
-
Should this pipeline be expected to work with the current versions of `numpy` and `h5py`? What's the reason for requiring specific versions of these two packages?
``` Makefile
pip install numpy==…
-
Hi yuntian,
Thanks for this very useful tool for the single cell isoform data preprocessing and downstream analysis!
I couldn't find fastq sequencing data from the paper, so could you please sha…
-
**The bug is primarily related to salmon (bulk mode)**
**Describe the bug**
```
Version Info: This is the most recent version of salmon.
# salmon (alignment-based) v0.14.1
# [ program ] => salmon…