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conda is leveraged for installing (some) dependencies (at least, the recommended install method), but conda is not fully leveraged via a bioconda recipe for installing scNanoGPS.
Are there plans on…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux 8.9
### Workflow Version
v2.2.0
### Workflow Execution
Command line (Cluster)
### Other workflo…
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### Description of feature
Would it be possible to add support for Oxford Nanopore Technology reads? I've found two projects (the second integrating the first) that might allow a quick implementation…
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Hi yuntian,
Thanks for this very useful tool for the single cell isoform data preprocessing and downstream analysis!
I couldn't find fastq sequencing data from the paper, so could you please sha…
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### Description of the bug
In discussion with Alex, Upasana, and Fernanda, we realized that we likely need to include the flag
`--no_filter_on_proper_pairs `when using the `graphtyper genotype` com…
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Write a cheatsheet page that summarises the steps for generating the consensus assembly.
Maybe this could be written as a sort of protocol:
- Before you start:
- type of data (nanopore or ill…
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### Description of the bug
I just want to use the pipeline for QC'ing my nanopore data, but it prematurely terminates after the initial step of the pipeline:
```bash
[70/93224f] process > NFCOR…
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Hi there,
I am trying to use your program, but the usage described in your paper is not very detailed.
Can you provide an example of configuratio file? What is cfg file?
Below is my config file f…
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Should this pipeline be expected to work with the current versions of `numpy` and `h5py`? What's the reason for requiring specific versions of these two packages?
``` Makefile
pip install numpy==…