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Dear all users of decontam,
I am very new to this and i am having some issues with the processing of my data,
I have obtained a feature table using EPI2ME 16s Workflow.
But i dont have OTU i h…
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There are some issues with this training that I collect here to fix step-by-step.
* In the preprocessing part, all fastq outputs go into multiQC, but since multiQC only shows one output for identical…
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### Ask away!
Hi,
we used 5prime v3 chemistry for Nanopore sequencing, is it the same as 5prime v2? Could I use 5prime v2 as well or is there any update?
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Hi,
I have Nanopore sequencing data for the 16s gene of microbioal communities. Can dada2 be used for this type of sequencing data, and if not, is it in development? Thanks!
Best wishes,
Carla …
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Hello,
Would be possible to perform a SNP variant calling using Nanopore sequencing data? What parameters would have to be modified and how could a custom error model based on Nanopore be created?…
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Good morning,
I am currently using Freebayes ( v1.3.6) to identify variants from Oxford Nanopore sequencing data. However, I have noticed that not all the expected SNPs and insertions are being det…
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Search SRA
"oxford nanopore"[Platform] AND mus musculus[Organism] AND "genomic"[Source]
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Dear developers:
openDBA has many applications, which are very interesting. Nanopore provides a kmer model for generating standard nanopore signals. By providing a sequence based on this kmer model, …
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Hello,
I have a question regarding the use of DeepSignal2 on the new version of nanopore sequencing. Since the sequencing data is no longer in the fast5 format, but in the pod5 format, I would like …
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conda is leveraged for installing (some) dependencies (at least, the recommended install method), but conda is not fully leveraged via a bioconda recipe for installing scNanoGPS.
Are there plans on…