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Hi,
I just came across your tool. Could you confirm if the tool would work on data from long-read sequencing?
Thank you
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Hi i am running mity via docker but encountered with some bam error, could not able to rectify it, actually i was trying to find out INDELS for long read ONT generated data, using minimap2 aligned bam…
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Hi i am running mity via docker but encountered with some bam error, could not able to rectify it, actually i was trying to find out INDELS for long read ONT generated data, using minimap2 aligned bam…
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Hi,
I am trying to run mtdna server by installing it offline, however i am using nextflow first time. i am able to install the process but encountered with the error:
ERROR ~ Unable to parse con…
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I am trying to create a consensus sequence (or consensus sequences for a few of the most abundant morphs) for the rDNA repeats of several mammal species that do not have existing rDNA reference sequen…
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Search SRA
"oxford nanopore"[Platform] AND mus musculus[Organism] AND "genomic"[Source]
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Dear all users of decontam,
I am very new to this and i am having some issues with the processing of my data,
I have obtained a feature table using EPI2ME 16s Workflow.
But i dont have OTU i h…
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Thanks for developing Strainy!
I'm trying to use amplicon-based Nanopore reads to figure out strain abundances in bacterial samples. The pool has 740 strains and each sample may contain ~10 of them. …
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Hi,
I have Nanopore sequencing data for the 16s gene of microbioal communities. Can dada2 be used for this type of sequencing data, and if not, is it in development? Thanks!
Best wishes,
Carla …
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### Ask away!
Hi,
we used 5prime v3 chemistry for Nanopore sequencing, is it the same as 5prime v2? Could I use 5prime v2 as well or is there any update?