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Dear Till,
I hope you are well and that I am not bothering you too much. I am working on DNA metabarcoding of the stomach contents of Atlantic bluefin tuna by amplifying partial fragments of the COI …
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Hi,
I am having an issue with error below. I have installed BLAST+ using the windows 64 executable but when I try and run in R I get the repeated error makeblastdb failed to run. I have checked th…
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### Checklist
- [X] I added a descriptive title.
- [X] I searched through [existing issues](https://github.com/ContinuumIO/anaconda-issues/issues) and couldn't find a solution or duplicate issue.
- […
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Hi,
I am using taxonkit lineage, and it works wonderfully so far. But there are a few species it seems not to be finding, despite their presence on the NCBI taxonomy portal.
I am not sure how th…
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For newbies, who are not familiar with shell. Or not family with other blast tools or packages. If you want to generate pairwise blast links with online NCBI Blast (https://blast.ncbi.nlm.nih.gov/Blas…
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Hi,
My results files are empty (contain headers only). Could you take a look please? Any help will be greatly appreciated.
I installed reCOGnizer as explained in the README and am using a bacter…
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The blast taxdb is a .tar.gz and the NCBI taxdump is a .zip. There's a .tar.gz available for the latter, so maybe we should just use the same for both? That way we can reuse the same process to extrac…
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Hi William,
Thanks for that demo of Sage Cloud last week in Lewis- Really amazing stuff.
If possible, it would be great to get NCBI Blast loaded. I am going to try to use it for teaching this summer (…
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Hi, I ran the command "./ident-16s hpsM15.fa.gz", the error was listed as follows“# 16S_rRNA_1_Origin_hpsM15 (uf:cut:1:470)
Error: NCBI C++ Exception:
T0 "/build/ncbi-blast+-S1iyIZ/ncbi-blast+-2…
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Hi there,
Sorry if it might be a stupid question. I just wonder what is the difference between qcovs from NCBI blast and qcovhsp from diamond blast? What I am doing now basically is to blastp of tr…