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Hi,
I am just starting to use your package. I have list of bacteria I would like to look for in my samples. However, I did a test with a small test following the tutorial and found that the sapply f…
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Hello, I am trying to build a database for taxor using ncbi refseq sequences from Prokaryotes, Archaea, Bacteria, Virus and Fungii (almost 50k orgamisms in total).
` taxor build --input-file ../../t…
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Please update the `download_summary.py` script so that if the `current_folder` and `previous_folder` columns are identical is produces an error message in the `error_flag` column.
For example, in …
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Hello,
Thank you for creating this great tool. I have successfully run read2tree using marker genes downloaded from OMA browser and my own data, which seems really great.
However, I found some pro…
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hgtector database -o db_dir/ --threads 16
Database building started at 2024-10-17 17:41:03.528510.
Using local file taxdump.tar.gz.
Reading NCBI taxonomy database... done.
Total number of Ta…
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I would suggest rebuild metabuli viral reference database using current official viral taxonomy provided on https://ictv.global/vmr
Technically, it is not difficult.
Your tool processed it very smo…
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It looks like there are 128 IDs missing from the following rat refseq datasets:
```
rat_protein_proteinnames_refseq.csv
rat_protein_genenames_refseq.csv
rat_protein_info_refseq.csv
```
I looked …
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Hi! I am not sure if this is a question for nextclade or augur.
I am using `augur ancestral` as part of a pipeline to create a tree for use in a nextclade dataset: https://github.com/anna-parker/ma…
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Thanks for sharing this amazing tool! I am running like this:
```
kdb --db-type standard --threads 30 --cache-dir .
```
And I continue to get an error like this:
```
subprocess.CalledProce…
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Hi,
Thank you very much for creating a good tool Ganon, I am using Ganon for taxonomic profiling but my target is not only bacteria and viruses, but also to identify species belonging to algae, fungi…