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Dear developers,
we installed MIRA on our Ubuntu server, which we access remotely, "docker compose up -d" starts the docker correctly, as we can see from "docker ps". The only change we made in the…
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I installed the pipeline on centos 7 cluster. I can run the pipeline using test_data successfully. When I tried to run my own dataset, the pipeline failed. The workflow terminated earlier.
![image…
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A recent [forum post](https://forums.ohdsi.org/t/osm-vocabulary/16303/7) highlighted the issue that some vocabularies are set to "required" and as such will be always part of a download bundle / canno…
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Hi There,
The nextclade tree and training set for H1N1pdm09 NA set appears to be missing [subclade B](https://nextstrain.org/flu/seasonal/h1n1pdm/na/6y?c=subclade&label=Subclade:B), which circulat…
uee9 updated
3 months ago
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I am requesting access to membership within the CDCgov GH Instance per direction from others. Let me know if I need to provide any further information for this to proceed.
qoh4 updated
5 months ago
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### Prefix
mvx
### Name
Manufacturers of Vaccines
### Homepage
https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=mvx
### Repository
https://phinvads.cdc.gov/vads/ViewCodeSystem.a…
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To help users and potential collaborators, please update the readme to follow the flu doc style and explicitly call out how you like folks to submit issues, test issues, commit (eg, dev branches vs ma…
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- [x] GISAID using their CLI API
- [x] NCBI - BioSample
- [x] NCBI - Genbank
- [x] NCBI - SRA
- [x] NCBI - Table2asn
cc: @leebrian @rchau88 @kristinelacek
nbx0 updated
7 months ago
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**Current Behavior**
A clear and concise description of what is happening / what the bug is.
Normally the data for the consensus files are regularly updated, but currently there have been no cha…
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`reformat.sh` crashes snakemake if run on an empty fastq. Empty fastq can be generated from `cat` step when fastq_pass/barcodeXX directory exists and there are no fastqs within it. I assume the direct…