-
Traceback (most recent call last):
File "PIGv.py", line 338, in
ncldv_out=ncldv_out[ncldv_out['MirusMCP']>=1]
File "/home/xiaomeng/miniconda3/envs/PIGV/lib/python3.7/site-packages/pandas/c…
-
Hi ! Vibriant is really nice, im enjoying it. I was wondering if NCLDV (Nucleocytoplasmic large DNA Viruses) are counted within the phage contigs report and if they maybe in a separate output the way …
-
Hey!
First of all, really appreciate virsorter (the first and also this followup tool).
With the novel classification, I came across the fact that (circular) mitochondrial sequences are consiste…
-
Hello, thanks for this tool!I have encountered the following problems during operation. May I ask what causes them and how can I solve them?:
Screening bins
cp: cannot stat 'EQ-6-2000m-vDNA/04_Viral…
-
Hello,
I tried to run Virsorter2 but I got the following error message:
OSError: [Errno 24] Too many open files: 'iter-0/NCLDV/all.pdg.gff.splitdir/all.pdg.gff.1020.split'
[Mon Feb 15 18:17:14 …
-
Hello, I'm receiving this error
``` [2023-11-02 11:44 INFO] VirSorter 2.2.4
[2023-11-02 11:44 INFO] /usr/local/bin/virsorter run --working-dir /global/cfs/cdirs/m3264/GRE/Kai_work/virsorter2/virs…
-
Hi,
I got this error during VirSorter2 run (environmental metagenomes contigs):
virsorter run -i sequences_cdhit_metagenomes.fasta -w VIRSORTERvers2 -j 4 all -d /home/nico/miniconda3/envs/virsorte…
-
hello!
I’m trying to input my virsorter2 results into anvio and I’m having some issues with the conversion script.
Here’s the error I am getting:
`./convert2anvio.sh
######################## Rea…
-
Hi,
I ran the program with the command
`virsorter run --prep-for-dramv -w DNA.results.out -i /data/LiuPeng/DNA.results/contigs.fa -j 110 all`
and got the following results,
> [2020-12-25 11:19 …
-
Hi, thanks in advance.
I have obtained multiple viral sequences identified by several tools, including vibrant. Now, i want to find AMGs. But it seems that vibrant could only annotate sequences ident…