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Tasks:
- [ ] release neuron morphology, make sure master branch has the latest codes
- [ ] deploy master branch to aws
Validation critera:
- [ ] test run at least one neuron and check out whether …
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The overall goal of this work is to enable pipeline users/maintainers to
- rapidly determine the status and health of the pipeline and detect failures
- easily download output data
- determine the …
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## Context
### Overview of the issue
If you use the `Import3d_Neurolucida3` on SWC files it does not recover properly and loading a correct ASC morphology afterwards will produce defunct loaders…
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https://www.biorxiv.org/content/10.1101/2024.06.06.597812v1
https://github.com/lahammond/RESPAN
Accurate and unbiased reconstructions of neuronal morphology, including quantification of dendriti…
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When I attempt to open a swc file from neuromorpho.org with the NEURON standard.
this is what the file looks like.
![image](https://github.com/BlueBrain/NeuroM/assets/9092872/49e22d03-1c00-457b-b54…
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If I want to export the morphological modeling file of each neuron and the coordinates of synaptic connections, which attribute category of the db file should I query?
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## Context
The call ```myspecies.nodes``` to get all compartments that have ```myspecies``` is very slow.
The call ```h.finitialize()``` is also very slow.
### Overview of the issue
In our…
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I am trying to exhaustively download and instance all the conductance based neuron models, and then instantiate them as NEURON simulator models.
I am trying the code below, but I am running into erro…
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Allen Institute's [Morphology technical white paper](http://help.brain-map.org/download/attachments/8323525/CellTypes_Morph_Overview.pdf?version=4&modificationDate=1528310097913&api=v2):
>Serial imag…
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We have many new terms for neuronal morphologies in the process of being added to PATO: https://github.com/pato-ontology/pato/issues/created_by/shawntanzk
We need to define a set of grouping classe…