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We decided to store volumetric data in the NIfTI1 format, because the volumes can store spatial orientation data (as a transform), and be loaded natively into slicer. I'm not quite sure how to impleme…
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Thank you for making your work available, it's really great! I have a question about connecting the output of segmentation to the input. I am providing a folder with DICOM files as input, and I'm gett…
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It would be useful for validation purposes to have a NIfTI-1 example file. This will help tools attempting to read files distinguish the failure cases of misparsing the extension or misparsing the NIf…
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I have a pipeline which works a little like:
1. convert dicom--> nifti (this was done a while ago using a different library)
2. do some processing and create synthetic CTs
3. convert nifti --…
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## Description
Hi Niivue team, thanks for your work on this package.
When using the code below for a ~10 MB NIfTI-GZ file, the image loads successfully. For a larger NIfTI-GZ file (~200 MB), I …
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Hi,
I have run the total segmentator tool by giving a dicom series as an input and since the output is in ".nii.gz" format, is there any way to implicitly convert the result file back to DICOM form…
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Getting this error
```
(tcia-processing) ➜ ThirdEyeVision python3 -W ignor
e /Users/vishalanand/Desktop/ThirdEyeVision/code/pet-ct-images/tcia_dicom_to_nifti.py /Users/vishalanand/Desktop/ThirdEye…
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Hi there,
is there a reason why there is a line of code that rounds the nifti outputs to integers?
`nifti_out = nib.Nifti1Image(np.round(nifti_out).astype(np.int16), affine, header) #fix scaling…
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Both converters `habs2bids` and `nifd2bids` have their own implementation of `install_nifti`:
https://github.com/aramis-lab/clinica/blob/83d6d9958b3b3e2ffe82e5fedf09cd70b3109a44/clinica/iotools/con…
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bdata is a very convenient format, so I want to convert my nifti dataset to bData.
1. I read "example_fmriprep.ipynb" in the "examples" file to learn how to do the job. Is input dataset in (https…