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Couple of questions:
1. What needs to be done/whats blocking the nifti implementation?
2. Other than the loaders, what does the nifti implementation change in the process?
- From my unde…
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VAChT_feobv_hc3_spreng.nii appears in parcellate.py and the csv files but not in the data/PET_nifti_images/ directory.
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"Happy to see this is still going!
I ran into this issue when I wanted to pick B1+ shimming back up for a project. I was not able to run the data conversion step of the tutorial without issues, and…
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We decided to store volumetric data in the NIfTI1 format, because the volumes can store spatial orientation data (as a transform), and be loaded natively into slicer. I'm not quite sure how to impleme…
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I have ITK 5.4 installed via conda, which installs a more recent version of the nifti library, see e.g. https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/ThirdParty/NIFTI/src/nifti/…
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What is missing in the following code line to convert NIFTI to BIDS with multiple subjects in one session?
D:\software\pyproj\proj_name>`bidsmapper raw BIDS -n '*' -p nibabel2bids`
OS: windows …
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Based on a discussion in: https://github.com/bids-standard/bids-specification/issues/138
The JSON metadata fields `PhaseEncodingDirection`, `SliceEncodingDirection` have corresponding values in the…
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I see from the source code you support NIfTI-1, but it's unclear if you support NIfTI-2 too, and both endian formats.
https://brainder.org/2015/04/03/the-nifti-2-file-format/
I think it should b…
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We currently rely on a simple affine transform to get NIfTI atlases from MNI152NLin6Asym to MNIInfant, which is pretty terrible. That shouldn't affect HBCD, since HBCD uses CIFTI processing.
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The HCP/DCAN output data was already smoothed at 2mm FWHM, according to the "Handbook of Functional MRI Data Analysis" by Poldrack et al., the additional smoothing would cause more smoothing than what…