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GaNDLF produces metrics that are different from our official inpainting package (https://pypi.org/project/inpainting/).
To compute metrics with the official package:
```
pip install inpaintin…
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**Describe the bug**
There is a significant performance gap between MONAI and SimpleITK when loading NIfTI (.nii.gz) files.
In my own benchmark I have found:
- MONAI average load time: 2.0321 secon…
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Per discussion with @effigies , it would be helpful to enable specification of a higher nifti sform tolerance via environmental variable.
There are cases where nifti headers, perhaps edited manuall…
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### Motivation
Suggested by Chris via email:
> Most the of the imaging data (of ENIGMA-PD and otherwise) is nowadays organized according to BIDS format. I would advise to either modify the script …
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## Description
Hi Niivue team, thanks for your work on this package.
When using the code below for a ~10 MB NIfTI-GZ file, the image loads successfully. For a larger NIfTI-GZ file (~200 MB), I …
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WARNING: In /tmp/SimpleITK-build/ITK/Modules/IO/NIFTI/src/itkNiftiImageIO.cxx, line 1934
NiftiImageIO (0x46dded0): /mnt/d/Desktop/paper/LMa-UNet-main/data/nnUNet_raw/Dataset027_ACDC/imagesTr/patient0…
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**Describe the bug**
I am trying create and run my own `prostate_mri_lesion_seg_app`. For this, I am using data from the QIN-Prostate-Repeatability collection. I've modified the `app.py` file to corr…
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### Describe the Bug
我的代码中使用了volumeLoader.registerVolumeLoader("nifti", cornerstoneNiftiImageVolumeLoader);来加载Nii.gz文件,但是当我传入了本地的肠癌的nii.gz文件时,解析之后显示的图像似乎不正确,会发生倾斜,具体表现如下:
![屏幕截图 2024-07-11 202412](h…
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Hello, I have some issue while using the totalsegmentator. Figured out that some of the dicom file might be corrupted. Tested using the pydicom.dcmread to read the "corrupted" file, if the force=True …
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Thank you for your nice work and code.
I'm having trouble utilizing your code to my own dataset.
**Task** (what are you trying to do/register?)
I'm trying to train new voxelmroph model that lea…