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**Describe the bug**
I was trying to follow the [tutorial](https://liana-py.readthedocs.io/en/latest/notebooks/prior_knowledge.html), but get the error: `AttributeError: module 'liana.resource' has n…
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I love Orthofinder, it has been so helpful in our research in so many ways.
I am having one particular issue where I am getting non-informative sequence IDs in all the fastas in the Single_Copy_Ort…
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* **Gene List**
Systematic ID | Gene name | Product description | Budding yeast orthologs | Human orthologs
-- | -- | -- | -- | --
SPBC146.12 | coq6 | 2-octaprenyl-6-methoxyphenol hydroxylase Coq…
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Hi @imk1,
Although I know that the main purpose of HLPER is not to transfer protein-coding genes, I wonder if Halpes has been tested for this task.
Let me explain my problem: I have two non-model …
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As @stephwon has been investigating how to integrate Gwenlyn's microbiomeKG with our metagenomicsKG (derived from RTX-KG2), the following issue was encountered again: mismatches between the SRI node n…
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Error in igraph::cluster_fast_greedy(significant_association_undirected_graph) :
At vendor/cigraph/src/community/fast_modularity.c:668 : Fast greedy community detection works only on graphs withou…
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@Antonialock 's first GO-CAM!
The model
http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A67086be200000363
The genes
https://www.pombase.org/results…
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bench marking standard
https://github.com/qfo/benchmark-webservice
https://orthology.benchmarkservice.org/proxy/
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Alpha Fold candidates (BH data not reciprocal)
Usp108 ~P57723. (PCBP4)~ cant be sure, is closer to rnc1
Usp109 P31483 (TIA1/RBM44) candidates
(different predictores give different results, probab…