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Hi, I wanted to convert a Seurat object built using mouse scRNA data to a new Seurat object with human orthologs. I would like to perform CellphoneDB analysis on the mouse data, but CellPhoneDB requir…
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Are we displaying references for orthologs? I ask because
SPBC354.10 UBAP2 PMID:35633597
reference is not showing
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Alpha Fold candidates (BH data not reciprocal)
Usp108 ~P57723. (PCBP4)~ cant be sure, is closer to rnc1
Usp109 P31483 (TIA1/RBM44) candidates
(different predictores give different results, probab…
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### Is there an existing subworkflow for this?
- [X] I have searched for the existing subworkflow
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issu…
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Annotate human orthologs similarly to S. cerevisiaie (N-ter, C-Term)
Systematic ID Gene name Product description
SPAC22A12.08c crd1 cardiolipin synthase/ hydrolase fusion protein Crd1
SPAC806…
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bench marking standard
https://github.com/qfo/benchmark-webservice
https://orthology.benchmarkservice.org/proxy/
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If I understand HGM (especially Augustus CGP HGM) correctly it returns "orthologs" even for CGPs. So the reference might be missing but the rest of the input genomes might share the annotate gene. Fro…
fbemm updated
6 years ago
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Hrd1 complex yeast
pombe Systematic ID pombe gene name Budding yeast orthologs Human orthologs
SPAC1565.08 cdc48 CDC48 VCP
SPBC365.08c der1 DER1,DFM1 DERL1,DERL2,DERL3
SPBC17D11.02c hrd1 HRD1 …
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Dear all,
The proposal has been made to obsolete GO:0036132 13-prostaglandin reductase activity (5 EXP annotations: human PTGR1 and orthologs) & replace by GO:0047522 15-oxoprostaglandin 13-oxida…
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I have the correct species tree for an analysis and I would want orthofinder to use it to detect orthologs; it possible to specify a tree for orthofinder?