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Dear seqwish team,
I built a bacteria pangenome graph with wfmash+seqwish+bandage, which is from Chlamydia trachomatis species, about 50 genomes/strains with ANI> 99%, I have the attached graph out…
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Hi, vg is a great software in pangenome.
I have 12 genome and gff files, and already built a graph-based pangenome with SV vcf file by _vg construct_ and _vg index_.
I also have some RNA-seq dat…
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Hi, I'm a Ph.D student in bioinformatics,
And I have some questions while using the "minigraph-cactus".
I run the program, in order to get some pangenome and vcf files in the graph.
I have 24 sequ…
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**PLEASE DO NOT MAKE SUPPORT REQUESTS HERE**
Please the Biostars forum instead:
https://www.biostars.org/new/post/?tag_val=vg
Ok I will post on Biostars later.
Hello dear friends!
Tha…
yeeus updated
2 months ago
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Hi,
I'm attempting to run GraffiTE in GT-sv-GA mode, but I encounter an error during the execution of the graph_align_reads (41) process, as shown in the message below. (However, when I run this st…
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Hi there,
Is it possible to merge pangenome graphs from independent runs? I know panaroo has that option, and would like to know if it would be possible to do so with ppanggolin.
If not, could you…
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This is a request for a new feature rule to use PPanGGOLiN to create pagenome graphs for the genome projects.
I think we should use the Roary-defined Gene Famillies as input to `ppanggolin`. This w…
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Our use of objects instead of strings for graph creation slowed down performance, probably due to the additional allocation.
```
2019-06-19 14:33:34 panther prairiedog[21158] DEBUG Done graphing S…
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Dear sir,
Using Anchorwave-cactus, we have successfully constructed a graph-based pangenome from 97 samples. However, the centromeric region is proving to be quite confusing and is impeding t…
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Hello vg team
It is amazing the work you are doing.
I am relatively new to using vg and I would appreciate a little help with my question please.
I want to download an already constructed human pa…