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For example, to implement edit distance, set the parameters to:
`_matScore = 0 ;
_misScore = -1 ;
_insScore = -1 ;
_delScore = _delStartScore = _delEndScore = -1 ;`
Then, set the program's inp…
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See [Lee et al 2002](http://bioinformatics.oxfordjournals.org/content/18/3/452.short). This is the data structure that backs [SINA](http://www.arb-silva.de/aligner) and probably a few other aligners, …
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https://github.com/schillij95/ThaumatoAnakalyptor/blob/613a8b1fb680509bbad51a57ad0ce63db65a56d3/ThaumatoAnakalyptor/instances_to_graph.py#L649
Given a patch **p** in a block **A** and an overlappin…
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```[tasklist]
### Requirements
- [ ] https://github.com/ComPWA/ampform/issues/281
```
### To-do [WIP]
- [ ] Move `scalar_initial_state_mass` and `stable_final_state_ids` config to `HelicityAdap…
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Hi Coyote Maintainers:
I am a PhD student from Northeastern University in Boston, US. I am considering using Coyote RDMA part in our project to communicate with Mellanox RDMA NIC. I am currently tr…
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Hi,
pggb has a parameter *-Q* to give consensus path a prefix name in the `smoothxg` step, what dose "consensus path" mean and where could I find it(I searched in gfa file but get no results).
t…
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Hi Guys
I'd like to be able to take a Harvest core genome MSA + the non-core bits that were cut out, and make a partial order alignment. i.e. I'd like something like
block {a,b,c} block {d,e,f} block…
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I hope this message finds you well. I am currently exploring smoothxg algorithm. I came across a statement in the paper that raised some questions for me:
"A key issue is that pairwise alignments d…
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## Question
I have just started using seqan3. I have worked with seqan2 though. I want to ask about multiple sequence alignment and alignment graphs in seqan3. I could not find anything about MSA i…
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### zot version
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