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@RalfG :
We have been trying to use MS2PIP in combination with USI. The use case is that for a given USI get the predicted b,y ions, retention time, intensities, etc, would be good to have also co…
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We need to figure out what is currently supported, what input files we need exactly, and what we can add.
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- [x] Write simple input that takes tsv or csv file with: peptidoform, spectrum_id, precursor_mz and write to Peptidoforms
- [ ] Write a function that takes a peptidoform removes modifications and ge…
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Hi Vadim and team,
I have generated a spectral library in skyline which I have exported as a report to be used in DIAnn. The reason for doing this is that I am analyzing histone PTMs and am interes…
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I don't think have not specified what the compact form should return for /peptidoforms
PeptideAtlas now implements
{
"countDatasets": 2,
"countPSM": 7,
"peptidoform": "[iTRAQ]-AAH…
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Hi,
I have it working for unlabeled data, but I did a discovery run for TMT to determine targets from DIA, but I can't seem to search it properly.
I am doing everything like unlabeled, but putti…
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Hello, I encountered an issue as described in the title.
Building Spectral Library using DIA-NN v1.9.1
I created a spectral library using DIA-NN 1.9.1 with the following parameters. The output f…
Mnago updated
2 months ago
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At least happening for the example dataset.
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Hello, firstly thanks so much for this great software!
I have a query regarding data analysis with DIANN v 1.9.1. I analysed two samples together in DIANN and identified 7,260 proteins and 7,246 pr…
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Hi Vadim,
I am a little curious in knowing how to derive the phospho site tables from the main DIA-NN report? Which columns and respective filters would I need to apply to derive the table. I real…