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A small discussion happened on the Slack #project-modsecurity from OWASP where I pointed out that, with TW changing ownership to OWASP of modsecurity, the domain name might need to be transmitted so t…
vloup updated
1 month ago
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The [VCF 4.4 spec](https://samtools.github.io/hts-specs/VCFv4.4.pdf) allows for an initial symbol indicating the phasing of the first allele. For example, `/0/1` is a valid genotype. This allows for p…
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Hi,
Firstly, many thanks for this incredibly useful tool.
I am running ClairS-TO with the singularity container on a ONT WGS run. The library was basecalled and aligned using dorado 0.6.2.
C…
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Coming out of #2403:
> For 2, the final HM will have the addition of both horizontal lines separating phases, and the ability to move loci up and down to be in the right phase if they are not put th…
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It'll frequently be the case that singletons are not phased. Singleton variants aren't used by tsinfer, but are crucial for correct dating. Here's how we'll handle unphased singletons:
1. Split edg…
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Hi,
I am trying to phase 21 individuals with shapeit5 but I get the error "Less than 50 samples is not enough to get reliable phasing, consider using a reference panel to increase sample size". I …
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Thank you very much for creating amazing resources!
Quick question: do you plan to release phased chromosome X any time soon?
Thanks again!
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The [VCF 4.4 spec](https://samtools.github.io/hts-specs/VCFv4.4.pdf) now allows for an initial symbol indicating the phasing of the first allele. For example, `/0/1` is a valid genotype. At present, v…
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## Description
an artifact with Phasing is immune to artifact container.
**Reproduction**
Sentient artifact with Phasing enabled is immune to artifact container.
**Additional context**
had a …
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[GLIMPSE2] Potential bug in the reported phased genotypes (GT field). Should be fixed in the testing version and will be updated in the new release as soon as possible.