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sgkit-dev
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bio2zarr
Convert bioinformatics file formats to Zarr
Apache License 2.0
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5
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Fix Char type bug
#271
jeromekelleher
closed
11 hours ago
1
Handle case where GT is defined in header, but not used in FORMAT
#270
tomwhite
closed
16 hours ago
4
Make chunks have the same number of dimensions as shape
#269
tomwhite
closed
1 day ago
1
Char fields added as Unicode not string
#268
jeromekelleher
closed
11 hours ago
1
Parsing fails for VCF with GT in header but not in FORMAT field
#267
tomwhite
closed
16 hours ago
1
Local alleles
#266
Will-Tyler
opened
6 days ago
8
Fix missing f string
#265
tomwhite
closed
1 week ago
2
Hypothesis tests for VCF
#264
tomwhite
closed
1 week ago
5
Optional first phasing symbol introduced in VCF 4.4
#263
timothymillar
opened
1 week ago
4
Add descriptions for the fixed fields
#262
Will-Tyler
closed
1 week ago
2
Use enums for VCF file and index types
#261
Will-Tyler
closed
1 week ago
0
Fix character field bounds update error
#260
jeromekelleher
closed
2 weeks ago
2
Numpy 2 fixups
#259
jeromekelleher
closed
2 weeks ago
2
ICF stores created with numpy 1.x won't work with numpy 2.x
#258
jeromekelleher
opened
2 weeks ago
1
Set copy=True in np.array creation for numpy 2.0 compatibility
#257
jeromekelleher
closed
2 weeks ago
1
Run tests against numpy 2
#256
jeromekelleher
opened
2 weeks ago
4
Distribution maintenance
#255
jeromekelleher
closed
2 weeks ago
8
Run tests against Zarr 3
#254
tomwhite
opened
3 weeks ago
9
Refactor variable names for consistency
#253
Will-Tyler
closed
2 weeks ago
4
Add multiple-file support to vcfpartition
#252
Will-Tyler
closed
2 weeks ago
8
ValueError: could not broadcast input array
#251
tomwhite
closed
2 weeks ago
0
Pin to zarr < 3
#250
jeromekelleher
closed
2 weeks ago
0
Hypothesis testing for vcf2zarr
#249
tomwhite
closed
1 week ago
13
Last docs updates and release
#248
jeromekelleher
closed
1 month ago
4
Change num_partitions to option
#247
jeromekelleher
closed
1 month ago
4
Add progress/no-progress flag to CLI
#246
jeromekelleher
closed
1 month ago
5
Fix syncronous commands bug
#245
jeromekelleher
closed
1 month ago
2
Change dencode-init to use --num-partitions
#244
jeromekelleher
closed
1 month ago
0
Change dexplode-init to use ``--num-parts``/``-n`` instead of positional
#243
jeromekelleher
closed
1 month ago
1
Some more docs3
#242
jeromekelleher
closed
1 month ago
2
Bug in dexplode-partition
#241
jeromekelleher
closed
1 month ago
0
Add --no-progress (or similar) to suppress progress
#240
jeromekelleher
closed
1 month ago
0
Restructure vcf2zarr docs
#239
jeromekelleher
opened
1 month ago
0
Refactor docs build infrastructure
#238
jeromekelleher
opened
1 month ago
0
Some more docs2
#237
jeromekelleher
closed
1 month ago
2
Some more docs
#236
jeromekelleher
closed
1 month ago
4
Add todo item for copying to object stores
#235
jeromekelleher
closed
1 month ago
2
Document copying to cloud storage
#234
jeromekelleher
opened
1 month ago
1
Add warning on Python 39 for macs
#233
jeromekelleher
closed
1 month ago
1
New tool: tskit2zarr
#232
jeromekelleher
opened
1 month ago
1
Add explicit warning for Mac Python 3.9
#231
jeromekelleher
closed
1 month ago
0
See if semaphore leak is from concurrent.futures
#230
jeromekelleher
closed
1 month ago
2
Add "what about cloud?" docs
#229
jeromekelleher
closed
1 month ago
0
Explicitly free multiprocessing.Value for progress
#228
jeromekelleher
closed
1 month ago
2
Set single mp context at early import
#227
jeromekelleher
closed
1 month ago
2
Try to silence harmless warning on py 3.9 Mac
#226
jeromekelleher
closed
1 month ago
3
Run python3.9 on MacOS 13
#225
jeromekelleher
closed
1 month ago
1
Add basic example to CI so we can see output
#224
jeromekelleher
closed
1 month ago
1
Fixup msprime based tests when packages are fixed
#223
jeromekelleher
opened
1 month ago
0
Raise an error when too-large chunks are encountered
#222
jeromekelleher
closed
1 month ago
1
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