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Are these as intended?
https://github.com/monarch-initiative/phenopacket-store/blob/1f62fb8610343e737b3fd16b0d1152aaac6448d0/notebooks/UMOD/phenopackets/PMID_27764983_Family1individualJ.json#L2-L4
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When I run pheval, I see this stacktrace coming ultimately from linkml_runtime I think
`ImportError: cannot import name 're' from 'typing' (/opt/homebrew/Cellar/python@3.13/3.13.0_1/Frameworks/Pyt…
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@pnrobinson
Could you add me to your phenopacket repo?
Now we can call Phenomiser with multiple query lists. The app optimizes the query sequence so to avoid repeated IO. Entry point is:
https:…
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Please see the section "Building blocks for Phenopackets -- it would be great to have a figure to illustrate the hierarchical structure of the messages. Please see the main page https://github.com/phe…
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Input phenotype profiles for analysis from a phenopacket file.
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You are limiting the protobuf versions to `>=3.20.2,
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I am getting an error loading this patient
```
·Individual PMID_25411445_Patient_5 has an error with variant SO:1000029_HGNC:12799_WWOX.
Try again or remove variant from testing... Could no…
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We may want to overload `__add__` or `__or__` operators on `Cohort` to allow merging two cohorts, because a cohort is essentially a set of individuals. The merge can succeed as long as there is no ind…
ielis updated
1 month ago
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To convert to valid proto files, we need to include package designations in the header.
Something like:
https://github.com/phenopackets/phenopacket-schema/blob/master/src/main/proto/phenopackets…
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Plan to attach and zip corpora to GitHub release to avoid having 1000's of phenopackets in version control