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### Description of feature
ddd
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When using the phylogenetic_analysis stage directly with new data, the workflow attempts to execute anicalc.py. However, since earlier stages were not run, required input files (such as blast output) …
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**Submitting author:** @marccanby (Marc Canby)
**Repository:** https://github.com/marccanby/linguiphyr/
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
**Editor:** @ajstewartl…
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**Submitting author:** @DamianJM (Damian John Magill)
**Repository:** https://github.com/DamianJM/T-REX
**Branch with paper.md** (empty if default branch): main
**Version:** v1.2
**Editor:** Pending
*…
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Hello,
I want to have an OTU table in which OTUs are identified by feature id and/or consensus sequence instead of by an assigned taxonomy (so that I can do phylogenetic analysis that isn't database …
irc47 updated
2 weeks ago
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I think it would be valuable to create a phylogenetic tree sub workflow.
1. autoMLST-based tree
2. GTDB tree using [de_novo_wf](https://ecogenomics.github.io/GTDBTk/commands/de_novo_wf.html)
3. …
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Hi,
It's my first time analysing metagenomics from a shotgun experiment but before to post this issue I tried some strategies to overcome the topic described below.
I would like to construct a phy…
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### Feature Request.
This is more of a feature request. Not sure if such a feature exists already in bio-python..It would be nice to have a Bayesian framework for photogenic analysis, analogous to…
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Hi Stefan,
Thanks to your great package I've been able to use the function CVA() to perform Canonical Variate Analysis on a set of specimens to investigate how the shapes differ among groups. I've …
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Dear immunarch team,
thank you for the user-friendly and highly useful package.
After loading 10x VDJ data `filtered_contig_annotations.csv` via `repLoad`, I run into problems when running `repGer…
mihem updated
2 years ago