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I am unable to find in the documentation how exactly a phylotree should be specified in the `--phylotree` argument of `haplogrep classify`.
For example, all the following fail:
```
--phylotree=…
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When choosing PhyloTree 17.1 (RSRS) as phylogenetic tree, I always get an error: "Job failed."
PhyloTree 17.0 works fine.
Input format: FASTA
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This is basically a second attempt at #10. @rispop is going to implement a phylotree component in an iterative manner. See the list below for steps and details:
- [x] Fork repository
- [x] Add a n…
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Tripal phylotree can't be installed on Tripal 3 sites since tripal_views fails to get enabled alongside the newer tripal 3 implementation. We can https://github.com/abretaud/tripal_phylotree
I'll a…
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Hey is there any way to generate a `Build_17_-_rCRS-based_haplogroup_motifs.csv`? I don't know how you made this but it would be a useful resource for the community.
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gene-tree git:(master) npm run dev
```
> phylotree@0.1.10 dev /Users/yun/code/my/db/gene-tree
> webpack-dev-server --open --port 3000 --contentBase src --hot
sh: webpack-dev-server: command …
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Dear @stevenweaver,
Could I know how to label bootstrap values on the node? Thanks.
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We have to ask the customer whether they want to be able to highlight a complete subtree in the phylogenetic tree (and via this, also highlighting all these strains in the strain view).
Currently, th…
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What are the units of the scale bar used in phylotree.js? Is it to showing the percentage distance between the nodes of the phylogeny tree? Like 0.04 is 40%
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Hi @lucblassel,
I want to calculate Unifrac distance (https://en.wikipedia.org/wiki/UniFrac) in parallel for a very large tree (3,000,000 tips), this is related to compute sum of branch length of s…