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Hi,
I would like to know, how did you integrate embeddings from three different protein language models. Did you extract the embeddings separately and take the average of the embeddings?
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Biotrainer is using [bio_embeddings](https://github.com/sacdallago/bio_embeddings) to calculate embeddings for the provided sequences. Currently, this does not allow for fine-tuning existing protein l…
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Hey John! Here's the curriculum that I've worked on in the past. It's a bit less focused on language models as a sole topic, and more on modern ML from a broad perspective.
- Essential Concepts of …
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Hello.
I want to use EquiPNAS to check my TF bing sites (picked up from RNA seq experiment).
After creating the environment with conda, I downloaded the published models and tested the operation.…
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**Youtube**
- [x] [AlphaFold2, OpenFold, Protein Language Models and Beyond | Nazim Bouatta](https://www.youtube.com/watch?v=ON1ltprZKPo) from Molecular Modeling and Drug Discovery (M2D2) 2022
- […
kntkb updated
7 months ago
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Hi thank you for your work. Is it possible to add constraints for the generation, espacially fix certain resiudes?
thanks in advance.
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Cadd version 1.7 has been [released](https://github.com/kircherlab/CADD-scripts/tree/v1.7). Among other update the scoring now also uses information from protein language models. See paper [here](http…
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Dear author,
this is a good job, how did you get the msa features(L*256)?
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In SBML spec, there is a definition of 'species':
Species: A pool of entities of the same kind located in a compartment and participating in reactions (processes). In biochemical network models, comm…
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ESM-1b is currently the most widely used protein language model. I want to use evolocity to test other language models. Do you have any suggestions?