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Any chance to adopt this for protein-protein interfaces?
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Hi! Is the PISA API working?
I currently have a series of unp_ids, such as ['Q5VTD9', 'Q6PL24', 'Q9UKM9', 'Q9H0A3', 'Q9P2N6', 'P21127', 'Q8TD94', 'Q86SH2', 'Q9BYR3', 'Q99856']. How can I retrieve fo…
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Hi!
Thank you for making available your program, it is very useful.
I have some questions about the design of protein-protein interface. I run the next command:
./UniDesign --command=ProteinDesig…
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Hi, thanks for sharing this code repository and this impressive work!
I understand that dMASIF can calculate the coordinates and normal vectors of protein surface vertices as below.
def pre…
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```
What steps will reproduce the problem?
1. Actually we tried not to reproduce it :)
2.
3.
What is the expected output? What do you see instead?
While giving a workshop on PRIDE the tool crashed fo…
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The database search via the web interface seems fine, but when loading an Uniprot sequence, no protein features are shown.
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```
What steps will reproduce the problem?
1. Actually we tried not to reproduce it :)
2.
3.
What is the expected output? What do you see instead?
While giving a workshop on PRIDE the tool crashed fo…
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Some nucleotide-protein interfaces have a very low score, like interfaces 6 and 7 of 5B1L.
I suggest to do a more thorough analysis to see if this is a common case, because here the DNA is rolled a…
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sh demo.sh
Namespace(model_dir='checkpoint_best.pt', input_protein='../example_data/protein.pdb', input_ligand='../example_data/ligand.sdf', input_batch_file='input_batch.csv', input_docking_grid='.…
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Hi, I love your work and the possibilities that offer being superfast. I was wondering if is it possible in binder design to only design specific residues of the binder knowing the structure of the ot…