-
Hi, I have a corpus of about 500,000 protein sequences and would like to apply them to existing models like ESM2 or this one for predicting the fitness effect of changing an amino-acid for another.
H…
-
Hi, I have a corpus of about 500,000 protein sequences and would like to apply them to existing models like ESM2 or this one for predicting the fitness effect of changing an amino-acid for another.
H…
-
At least in production, we currently include stop codons (`*`) at the end of our protein sequences. I think to me this feels quite unexpected. NCBI doesn't seem to do it: https://www.ncbi.nlm.nih.gov/…
-
Hi, I have a corpus of about 500,000 protein sequences and would like to apply them to existing models like ESM2 or this one for predicting the fitness effect of changing an amino-acid for another.
H…
-
Hi, I have a corpus of about 500,000 protein sequences and would like to apply them to existing models like this one for predicting the evolution of monoclonal antibody binding to an epitope.
How cou…
-
Homology search started at 2024-08-21 08:40:06.163220.
Settings:
Search method: diamond.
Self-alignment method: native.
Remote fetch enabled: no.
Reading input proteins...
Sulfurospirill…
-
Dear Author.
Thank you for your contribution to protein function prediction. According to your paper, Domain-PFP performs well against many of the latest tools. I am considering using your tool to …
-
Hi Luwei!
I am running the test example, apparently without errors. But this single protein is taking too long (over one hour). Also, while I am using a dedicated GPU (RTX-4090), its utilization is…
-
* **InterPro ID / label**
IPR012080
* **Example sequences with problematic annotation (ID + gene/protein name):**
https://www.ebi.ac.uk/QuickGO/annotations?geneProductId=P78780&aspect=biolo…
-
i am using dynamicbind package very frequently it is an excellent package and helped me a lot in my work but suddenly it started giving an error `(dynamicbind) kinshuk@kinshuk-lab:~/Desktop/Anupam/Dyn…