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**Description:**
Add a feature to generate a screenshot of the PDB file with coloring based on B-factors. This screenshot should be included in the output directory and referenced in the final report…
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Hi,
I have a problem with the systemPrepare function since I installed the new version. When I switched to another environment which still had an older version of HTMD installed the error did not o…
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Dear Vadim,
I would like to ask a very basic question about Protein.Group in dia-NN. Below is an example of the protein groups extracted from the pg_matrix.
Protein.Group …
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Hi Team,
Thank you for the excellent work on ESM3.
I am currently comparing the performance of ESM3 on the CAMEO and CASP14 datasets with ESMFold and AlphaFold2. The CAMEO dataset I am using is …
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**Is your feature request related to a problem? Please describe.**
Please provide documentation on the submission for GlycoProteins for 3D structure generation. The input would be a PDB ID for the pr…
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## 🚀 Feature
I propose adding protein sequence data to MolNet as part of the recent efforts to increase support for proteins. Please feel free to suggest alternative datasets or use cases that shou…
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* PIGT version:
* Python version: 3.9
* Operating System: centos
### Description
Ran:
```
neuralplexer-inference --task=batched_structure_sampling \
--input-receptor …
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Hello,
I am trying to run a docking of a receptor whose structure was obtained from protein data bank. I deleted all the water and heteroatoms and followed the receptor processing tutorial in AutoD…
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Hi, I used rfaa to test the posebuster set, but the precision I got was not as good as the 42% docking success rate mentioned in the article. I think my test protocol is not consistent with yours. Cou…
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## Expected Behavior
**Hi guys, thanks a lot for making this amazing tool!**
**here is my backgorund**
I would like to use AFDB_Cluster to expand structure databse(PDB dataset) to get some i…