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Provide a list of protein 3D structures as part of the protein details. PDB files are provided by #1355 and #1354. They need to be filtered based on the criteria developed by @jeet-vora and @rajamazum…
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You can no longer load structures hosted by the RCSB by providing their PDB ID. For example, you cannot load the structure [6XDG](https://www.rcsb.org/structure/6XDG) into the [NGL web application](ht…
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Hello,
I am encountering an issue when using molpc2 to predict the structure of large proteins with known stoichiometry information. For example, when I try to predict the structure of 1A8R (or 5BSE)…
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Hi,
Is there a way (or a flag) for having multiple PDB structures predicted for protein-protein complex with small molecule? The default is only one outout PDB given.
mtahe updated
2 months ago
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Hello everyone!
I've been working on a project where it would be very cool to have more protein structures rendered in the same viewer simultaneously but as individual objects. I would also like to…
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Can Preethi give us the PDB and Alphafold 3D structure files for all the organisms (and perhaps proteins) in GlyGen?
Once we have the files Robel will filter them to create a dataset of the best st…
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I have been trying to prep a local folder of 56 structures using the CLI via ` asap-prep --target SARS-CoV-2-Mac1 --structure-dir SARS2_Nsp3_Mac1_main --save-to-cache --cache-dir mac1-prepped --output…
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A FileNotFoundError: [Errno 2] No such file or directory: error occurs. This error appears when inputting long sequences or complex structures into the contigs. When generating proteins with simple st…
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I am only focusing on the standard runs of `-mm 5` and `-mm 6` for two monomeric protein structures. I want to remove all extraneous parameters that are currently implemented in USalign's code base (i…
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Explore integrating Alphafold cross-referencing and 3D structures of proteins not in PDB